Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
Info • Aspergillus siamensis CBS 137452 v1.0

Status

[June 2019] The Aspergillus siamensis CBS 137452 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus siamensis CBS 137452 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 32.73
Sequencing read coverage depth 92x
# of contigs 428
# of scaffolds 374
# of scaffolds >= 2Kbp 332
Scaffold N50 39
Scaffold L50 (Mbp) 0.27
# of gaps 54
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.73, 0.72, 0.68


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55628 54100 97.3%
Ests est.fasta 116559620 115703927 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1963 1712
transcript 1783 1544
exon 545 328
intron 81 61
description:
protein length (aa) 481 402
exons per gene 3.27 3
# of gene models 11213


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.