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Info • Aspergillus stercoraria CBS 428.93 v1.0

Status

[May 2016] The Aspergillus stercoraria CBS 428.93 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus stercoraria v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.26
Sequencing read coverage depth 80.7x
# of contigs 312
# of scaffolds 278
# of scaffolds >= 2Kbp 257
Scaffold N50 29
Scaffold L50 (Mbp) 0.30
# of gaps 34
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.53, 1.11, 0.84


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 41824 40201 96.1%
Ests est.fasta 40632728 40105132 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1870 1644
transcript 1698 1476
exon 537 318
intron 82 60
description:
protein length (aa) 468 392
exons per gene 3.16 3
# of gene models 10324


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.