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Info • Aspergillus stella-maris CBS 113639 v1.0

Status

[May 2016] The Aspergillus stella-maris CBS 113639 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus stella-maris v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.00
Sequencing read coverage depth 90.6x
# of contigs 308
# of scaffolds 266
# of scaffolds >= 2Kbp 218
Scaffold N50 31
Scaffold L50 (Mbp) 0.34
# of gaps 42
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.35, 1.15, 1.10


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 30735 29894 97.3%
Ests est.fasta 38257586 37426272 97.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1852 1608
transcript 1684 1456
exon 538 326
intron 81 60
description:
protein length (aa) 477 400
exons per gene 3.13 3
# of gene models 12537


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.