Info • Aspergillus sublatus IBT 19356 v1.0

Status

[July 2017] The Aspergillus sublatus IBT 19356 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus sublatus IBT 19356 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.20
Sequencing read coverage depth 98.9x
# of contigs 512
# of scaffolds 482
# of scaffolds >= 2Kbp 438
Scaffold N50 58
Scaffold L50 (Mbp) 0.15
# of gaps 30
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.76, 0.67, 0.58


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39340 35505 90.3%
Ests est.fasta 64567208 63929298 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1898 1665
transcript 1721 1504
exon 529 312
intron 81 60
description:
protein length (aa) 486 412
exons per gene 3.25 3
# of gene models 11016


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.