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Info • Aspergillus sydowii CBS 593.65 v1.0

Status

This draft release was produced using Illumina data assembled with AllPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Aspergillus sydowii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 34.38
Sequencing read coverage depth 95.1
# of contigs 133
# of scaffolds 97
# of scaffolds >= 2Kbp 82
Scaffold N50 5
Scaffold L50 (Mbp) 2.29
# of gaps 36
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 5.54, 4.00, 3.58


ESTs Data set # sequences total # mapped to genome % mapped to genome
RNAseq contigs RNAseq contigs 43843 40733 92.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1716 1490
transcript 1547 1347
exon 491 292
intron 81 60
description:
protein length (aa) 465 397
exons per gene 3.15 3
# of gene models 13620


Collaborators

Ronald de Vries, CBS Fungal Biodiversity Centre, Institute of the Royal Netherlands Academy of Arts and Sciences

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.