Info • Aspergillus tamarii CBS 117626 v1.0

Status

[October 2016] The Aspergillus tamarii CBS 117626 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus tamarii v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.51
Sequencing read coverage depth 77.8x
# of contigs 476
# of scaffolds 448
# of scaffolds >= 2Kbp 364
Scaffold N50 51
Scaffold L50 (Mbp) 0.21
# of gaps 28
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.85, 0.82, 0.77


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39508 38908 98.5%
Ests est.fasta 30093120 29619168 98.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1834 1608
transcript 1648 1446
exon 520 311
intron 88 63
description:
protein length (aa) 464 389
exons per gene 3.17 3
# of gene models 13331


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.