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Info • Aspergillus transcarpathicus CBS 423.68 v1.0

Status

[October 2019] The Aspergillus transcarpathicus CBS 423.68 v1.0 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus transcarpathicus CBS 423.68 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 30.23
Sequencing read coverage depth 85.9x
# of contigs 267
# of scaffolds 234
# of scaffolds >= 2Kbp 198
Scaffold N50 22
Scaffold L50 (Mbp) 0.48
# of gaps 33
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.46, 1.14, 1.10


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 29017 27753 95.6%
Ests est.fasta 45003196 41225177 91.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1987 1702
transcript 1793 1534
exon 539 324
intron 85 65
description:
protein length (aa) 498 414
exons per gene 3.33 3
# of gene models 10456


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.