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Info • Aspergillus udagawae CBS 114217 v1.0

Status

[February 2021] The Aspergillus udagawae CBS 114217 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 32.18
Sequencing read coverage depth 161.7x
# of contigs 153
# of scaffolds 136
# of scaffolds >= 2Kbp 131
Scaffold N50 21
Scaffold L50 (Mbp) 0.54
# of gaps 17
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.34, 1.26, 1.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46650 45440 97.4%
Ests est.fasta 188050351 186990826 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1966 1709
transcript 1800 1562
exon 563 346
intron 78 61
description:
protein length (aa) 475 395
exons per gene 3.19 3
# of gene models 11454


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.