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Info • Aspergillus uvarum CBS 121591 v1.0

Status

Assembly v1 (May 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus uvarum CBS 121591 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.85
Sequencing read coverage depth 106.4x
# of contigs 207
# of scaffolds 172
# of scaffolds >= 2Kbp 156
Scaffold N50 30
Scaffold L50 (Mbp) 0.40
# of gaps 35
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.05, 0.92, 0.85


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 29235 28975 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1837 1572
transcript 1630 1402
exon 518 309
intron 98 66
description:
protein length (aa) 468 389
exons per gene 3.15 3
# of gene models 12017


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.