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Info • Aspergillus vadensis CBS 113365 v1.0

Status

Assembly v1 (May 2014) is a minimal draft assembly of Illumina gDNA reads using AllPathsLG and Velvet.

Summary statistics for the Aspergillus vadensis CBS 113365 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.66
Sequencing read coverage depth 100.8x
# of contigs 71
# of scaffolds 60
# of scaffolds >= 2Kbp 59
Scaffold N50 11
Scaffold L50 (Mbp) 1.03
# of gaps 11
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.68, 2.55, 2.00


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 28350 28017 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1822 1557
transcript 1629 1398
exon 502 294
intron 88 62
description:
protein length (aa) 474 395
exons per gene 3.25 3
# of gene models 12132


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.