Info • Aspergillus varians CBS 505.65 v1.0

Status

[March 2017] The Aspergillus varians CBS 505.65 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus varians v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 29.82
Sequencing read coverage depth 104.5x
# of contigs 482
# of scaffolds 427
# of scaffolds >= 2Kbp 385
Scaffold N50 66
Scaffold L50 (Mbp) 0.15
# of gaps 55
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.53, 0.41, 0.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34333 33400 97.3%
Ests est.fasta 45845029 37688665 82.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1883 1632
transcript 1703 1471
exon 530 317
intron 84 62
description:
protein length (aa) 478 398
exons per gene 3.21 3
# of gene models 10839


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.