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Info • Aspergillus viridinutans CBS 127.56 v1.0

Status

[November 2019] The Aspergillus viridinutans CBS 127.56 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus viridinutans CBS 127.56 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.44
Sequencing read coverage depth 151.79x
# of contigs 234
# of scaffolds 210
# of scaffolds >= 2Kbp 204
Scaffold N50 26
Scaffold L50 (Mbp) 0.39
# of gaps 24
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.42, 1.15, 1.11


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40768 39258 96.3%
Ests est.fasta 111733815 110963514 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1933 1681
transcript 1756 1529
exon 540 326
intron 81 61
description:
protein length (aa) 480 399
exons per gene 3.25 3
# of gene models 10326


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.