Info • Aspergillus welwitschiae CBS139.54b v1.0

Status

[July 2016] The Aspergillus welwitschiae CBS 139.54b genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Aspergillus welwitschiae v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.51
Sequencing read coverage depth 139.1x
# of contigs 443
# of scaffolds 396
# of scaffolds >= 2Kbp 296
Scaffold N50 17
Scaffold L50 (Mbp) 0.76
# of gaps 47
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.16, 1.83, 1.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34546 33174 96.0%
Ests est.fasta 39728090 32264328 81.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1768 1516
transcript 1585 1353
exon 504 300
intron 87 63
description:
protein length (aa) 447 368
exons per gene 3.14 3
# of gene models 13687


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.