Info • Asterochloris sp. Cgr/DA1pho v1.0
Please note that this organism is for archival use only. Please see the current Asterochloris glomerata Cgr/DA1pho v2.0 site for the latest data and information.

Status

Assembly v1 ((28 July 2010) is a draft assembly of 454 gDNA reads. A total of 153 scaffolds and 56.1 Mbp were assembled using Newbler:

Nuclear Genome Assembly: v1.0
Scaffold count: 153
All Contig count: 970
Scaffold sequence bases total: 56.1 Mbp
Scaffolded (Large) Contig sequence bases total: 55.8 Mbp
Estimated % sequence bases in gaps: 0.7%
Scaffold N50 / L50: 25 / 784.9 kbp
Contig N50 / L50: 138 / 119.5 kbp
Number of scaffolds > 50.0 Kb: 109
% in scaffolds > 50.0 Kb: 99.2%
% assembly masked by repeats: 0.1%

Annotation v1 (28 July 2010) of the v1.0 assembly was produced by the JGI Annotation Pipeline, using a variety of protein-based and ab initio gene predictors. After filtering for protein homology support, a total of 7159 genes were structurally and functionally annotated:

Nuclear Genome Annotation: v1.0
# gene models: 7159
Gene density: 128 genes per Mbp scaffold
Avg.gene length: 4549 nt
Avg. protein length: 465 aa
Avg. exon frequency: 9.26 exons per gene
% genes with intron: 96 %
% complete gene models (with start and stop codons): 74%
% genes with NR support: 93%
% genes with Pfam domains: 73%
% genes with transmembrane domain: 15%
% genes in multigene family: 60%

Collaborators:

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.