Info • Atractiellales rhizophila v2.0

Status

(August 2013) The genome of Atractiellales rhizophila was sequenced using Illumina technology and assembled using AllPathsLG version R44849 (Gnerre et al., 2010).

Summary statistics for the Atractiellales rhizophila v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.47
Sequencing read coverage depth 66.7x
# of contigs 3076
# of scaffolds 1998
# of scaffolds >= 2Kbp 1618
Scaffold N50 220
Scaffold L50 (Mbp) 0.07
# of gaps 1078
% of scaffold length in gaps 3.3%
Three largest Scaffolds (Mbp) 0.32, 0.31, 0.30


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 58651 52544 89.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1584 1309
transcript 1220 1011
exon 230 143
intron 87 56
description:
protein length (aa) 352 284
exons per gene 5.30 4
# of gene models 17606


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.