Info • Aulographum hederae v2.0


[April 2013] The Aulographum hederae CBS 113979 genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R41043 (Gnerre et al., 2010).
A 39.9 Kb mitochondrial genome was assembled separately and is available in the download section.

Summary statistics for the Aulographum hederae CBS 113979 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.98
Sequencing read coverage depth 116x
# of contigs 613
# of scaffolds 173
# of scaffolds >= 2Kbp 153
Scaffold N50 20
Scaffold L50 (Mbp) 0.53
# of gaps 440
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 1.35, 1.17, 1.15

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 25835 24639 95.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1656 1429
transcript 1509 1281
exon 568 358
intron 91 60
protein length (aa) 428 346
exons per gene 2.66 2
# of gene models 12127


Joseph Spatafora, Oregon State University, USA

Pedro Crous and Manfred Binder at CBS-KNAW, Netherlands.

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.