Info • Auriculariopsis ampla NL-1724 v1.0

Status

[August 2016] (Aug 2016) The Auriculariopsis ampla NL-1724 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Auriculariopsis ampla v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.87
Sequencing read coverage depth 54.38x
# of contigs 351
# of scaffolds 351
# of scaffolds >= 2Kbp 343
Scaffold N50 19
Scaffold L50 (Mbp) 0.54
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.71, 3.48, 2.25


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 73564 53270 72.4%
Ests est.fasta 74800772 69462464 92.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1764 1500
transcript 1437 1224
exon 251 154
intron 71 55
description:
protein length (aa) 418 346
exons per gene 5.72 4
# of gene models 15576


Collaborators

László Nagy, Hungarian Academy of Sciences

Joseph W. Spatafora, Oregon State University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.