Status
This draft assembly was produced using Sanger (Fosmids),
Roche (454)
and shredded consensus from Velvet-assembled Illumina data.
Newbler was
the assembler.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 74.92 |
| Sequencing read coverage depth | 46.57 |
| # of contigs | 4323 |
| # of scaffolds | 1531 |
| # of scaffolds >= 2Kbp | 1531 |
| Scaffold N50 | 44 |
| Scaffold L50 (Mbp) | 0.49 |
| # of gaps | 2792 |
| % of scaffold length in gaps | 7.8% |
| Three largest Scaffolds (Mbp) | 2.21, 2.07, 1.79 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | EstClusters | 14766 | 13886 | 94.0% |
| Ests | ESTs | 1184015 | 1149778 | 97.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1604 | 1309 |
| transcript | 1249 | 1044 |
| exon | 251 | 145 |
| intron | 91 | 55 |
| description: | ||
| protein length (aa) | 386 | 322 |
| exons per gene | 4.98 | 4 |
| # of gene models | 23577 |
Collaborators
- PI: Igor Grigoriev, DOE Joint Genome Institute
- David Hibbett, Hibbett lab at Clark University
Links
Publication:
Floudas D, Binder M, Riley R, Barry K, Blanchette RA, Henrissat B, Martínez AT, Ortillar R, Spatafora JW, Yadav JS, Aerts A, Benoit I, Boyd A, Carlson A, Copeland A, Coutinho PM, de Vries RP, Ferreira P, Findley K, Foster B, Gaskell J, Glotzer D, Górecki P, Heitman J, Hesse C, Hori C, Igarashi K, Jurgens JA, Kallen N, Kersten P, Khajamohiddin A, Kohler A, Kues U, Kumar TKA, Kuo A, LaButti K, Larrondo LF, Lindquist E, Ling A, Lucas S, Lundell T, Martin R, McLaughlin DJ, Morgenstern I, Morin E, Murat C, Nolan M, Ohm RA, Patyshakuliyeva A, Rokas A, Ruiz-Dueñas FJ, Sabat G, Salamov A, Samejima M, Schmutz J, Slot JC, John FS, Stenlid J, Sun H, Sun S, Tsang A, Wiebenga A, Young D, Pisabarro A, Eastwood DC, Martin F, Cullen D, Grigoriev IV, Hibbett DS (2012) The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes. Science. 336(6089):1715-1719.
