Status
March 2013. The genome of Aureobasidium pullulans EXF-150 was sequenced using Illumina technology and assembled using AllPathsLG (R38445).
Summary statistics for the Aureobasidium pullulans EXF-150
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 29.62 |
| Sequencing read coverage depth | 172.5x |
| # of contigs | 209 |
| # of scaffolds | 186 |
| # of scaffolds >= 2Kbp | 103 |
| Scaffold N50 | 10 |
| Scaffold L50 (Mbp) | 1.17 |
| # of gaps | 23 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 2.69, 2.12, 1.90 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator-assembled Illumina ESTs | 27547 | 25427 | 92.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1629 | 1399 |
| transcript | 1512 | 1297 |
| exon | 609 | 369 |
| intron | 81 | 57 |
| description: | ||
| protein length (aa) | 444 | 369 |
| exons per gene | 2.48 | 2 |
| # of gene models | 11866 |
Collaborators
- Prof. Dr. Nina Gunde-Cimerman, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
- Dr. Cene Gostincar, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
- Dr. Tina Kogej, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
- Dr. Silva Sonjak, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
- Dr. Martina Turk,University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
- Dr. Polona Zalar,University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Gostinčar C, Ohm RA, Kogej T, Sonjak S, Turk M, Zajc J, Zalar P, Grube M, Sun H, Han J, Sharma A, Chiniquy J, Ngan CY, Lipzen A, Barry K, Grigoriev IV, Gunde-Cimerman N
Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species.
BMC Genomics. 2014 Jul 1;15():549. doi: 10.1186/1471-2164-15-549
Gostinčar C, Ohm RA, Kogej T, Sonjak S, Turk M, Zajc J, Zalar P, Grube M, Sun H, Han J, Sharma A, Chiniquy J, Ngan CY, Lipzen A, Barry K, Grigoriev IV, Gunde-Cimerman N
Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species.
BMC Genomics. 2014 Jul 1;15():549. doi: 10.1186/1471-2164-15-549
Links
- The portal for Aureobasidium pullulans
- The portal for Aureobasidium subglaciale
- The portal for Aureobasidium melanogenum
- The portal for Aureobasidium namibiae
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
