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Info • Aureobasidium pullulans var. subglaciale EXF-2481

Status

The genome of Aureobasidium subglaciale EXF-2481 was sequenced using Illumina technology and assembled using Velvet (version 1.1.04) and ALLPATHS (version r41043).

Summary statistics for the Aureobasidium subglaciale EXF-2481 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.80
Sequencing read coverage depth 814x
# of contigs 84
# of scaffolds 75
# of scaffolds >= 2Kbp 67
Scaffold N50 11
Scaffold L50 (Mbp) 0.82
# of gaps 9
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.14, 1.78, 1.48


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests Illumina RNAseq ESTs assembled with RNNotator 25623 24595 96.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1643 1424
transcript 1536 1325
exon 611 363
intron 73 57
description:
protein length (aa) 453 377
exons per gene 2.51 2
# of gene models 10809


Collaborators

  • Prof. Dr. Nina Gunde-Cimerman, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Cene Gostincar, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Tina Kogej, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Silva Sonjak, University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Martina Turk,University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia
  • Dr. Polona Zalar,University of Ljubljana, Biotechnical Faculty, Dept. of Biology, Slovenia

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.