Info • Auxenochlorella protothecoides 0710


The genome sequence and gene models of Auxenochlorella protothecoides 0710 have not been determined by the JGI, but were downloaded from the LANL Greenhouse omics knowledgebase on May 2, 2017. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated.

Summary statistics for the Auxenochlorella protothecoides release are below.
Genome Assembly
Genome Assembly size (Mbp) 22.92
Sequencing read coverage depth 159x
# of contigs 1360
# of scaffolds 374
# of scaffolds >= 2Kbp 186
Scaffold N50 24
Scaffold L50 (Mbp) 0.29
# of gaps 986
% of scaffold length in gaps 4.7%
Three largest Scaffolds (Mbp) 1.14, 0.84, 0.73

Gene Models ExternalModels
length (bp) of: average median
gene 2347 1744
transcript 1186 945
exon 207 149
intron 248 187
protein length (aa) 395 315
exons per gene 5.72 5
# of gene models 7013

Genome Reference(s)


This project was not sequenced at the JGI.