Status
The genome sequence and gene models of Auxenochlorella protothecoides 0710 have not been determined by the JGI, but were downloaded from the LANL Greenhouse omics knowledgebase on May 2, 2017. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by LANL and is therefore not automatically updated.
Summary statistics for the Auxenochlorella protothecoides
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 22.92 |
| Sequencing read coverage depth | 159x |
| # of contigs | 1360 |
| # of scaffolds | 374 |
| # of scaffolds >= 2Kbp | 186 |
| Scaffold N50 | 24 |
| Scaffold L50 (Mbp) | 0.29 |
| # of gaps | 986 |
| % of scaffold length in gaps | 4.7% |
| Three largest Scaffolds (Mbp) | 1.14, 0.84, 0.73 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2347 | 1744 |
| transcript | 1186 | 945 |
| exon | 207 | 149 |
| intron | 248 | 187 |
| description: | ||
| protein length (aa) | 395 | 315 |
| exons per gene | 5.72 | 5 |
| # of gene models | 7013 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Gao C, Wang Y, Shen Y, Yan D, He X, Dai J, Wu Q
Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes.
BMC Genomics. 2014 Jul 10;15():582. doi: 10.1186/1471-2164-15-582
Gao C, Wang Y, Shen Y, Yan D, He X, Dai J, Wu Q
Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes.
BMC Genomics. 2014 Jul 10;15():582. doi: 10.1186/1471-2164-15-582
Funding
This project was not sequenced at the JGI.
