Status
The genome sequence and gene models of Bathycoccus prasinos have not been determined by the JGI, but were downloaded from NCBI, on March 27, 2018. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Bathycoccus prasinos RCC1105
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 15.07 |
| Sequencing read coverage depth | 22x |
| # of contigs | 39 |
| # of scaffolds | 21 |
| # of scaffolds >= 2Kbp | 21 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 0.96 |
| # of gaps | 18 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 1.35, 1.12, 1.09 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1597 | 1272 |
| transcript | 1566 | 1242 |
| exon | 1316 | 1050 |
| intron | 165 | 133 |
| description: | ||
| protein length (aa) | 522 | 414 |
| exons per gene | 1.19 | 1 |
| # of gene models | 7900 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, Van Bel M, Poulain J, Katinka M, Hohmann-Marriott MF, Piganeau G, Rouzé P, Da Silva C, Wincker P, Van de Peer Y, Vandepoele K
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage.
Genome Biol. 2012 Aug 24;13(8):R74. doi: 10.1186/gb-2012-13-8-r74
Moreau H, Verhelst B, Couloux A, Derelle E, Rombauts S, Grimsley N, Van Bel M, Poulain J, Katinka M, Hohmann-Marriott MF, Piganeau G, Rouzé P, Da Silva C, Wincker P, Van de Peer Y, Vandepoele K
Gene functionalities and genome structure in Bathycoccus prasinos reflect cellular specializations at the base of the green lineage.
Genome Biol. 2012 Aug 24;13(8):R74. doi: 10.1186/gb-2012-13-8-r74
Funding
This project was not sequenced at the JGI.
