Status
The genome sequence and gene models of Batrachochytrium salamandrivorans BS were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.64 |
| Sequencing read coverage depth | |
| # of contigs | 5810 |
| # of scaffolds | 5358 |
| # of scaffolds >= 2Kbp | 3803 |
| Scaffold N50 | 814 |
| Scaffold L50 (Mbp) | 0.01 |
| # of gaps | 452 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 0.07, 0.07, 0.06 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2327 | 1901 |
| transcript | 1742 | 1359 |
| exon | 386 | 194 |
| intron | 169 | 142 |
| description: | ||
| protein length (aa) | 468 | 351 |
| exons per gene | 4.51 | 3 |
| # of gene models | 12471 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Farrer RA, Martel A, Verbrugghe E, Abouelleil A, Ducatelle R, Longcore JE, James TY, Pasmans F, Fisher MC, Cuomo CA
Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi.
Nat Commun. 2017 Mar 21;8():14742. doi: 10.1038/ncomms14742
Farrer RA, Martel A, Verbrugghe E, Abouelleil A, Ducatelle R, Longcore JE, James TY, Pasmans F, Fisher MC, Cuomo CA
Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi.
Nat Commun. 2017 Mar 21;8():14742. doi: 10.1038/ncomms14742
Links
- JGI PhyloGroup Portals: Fungi Chytridiomycota Chytridiomycetes
Funding
This project was not sequenced at the JGI.
