Info • Botrytis cinerea B05.10

Status

The genome sequence and gene prediction of Botrytis cinerea B05.10 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Nov 11, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 2316 ExternalModels were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 42.63
Sequencing read coverage depth 35x
# of contigs 18
# of scaffolds 18
# of scaffolds >= 2Kbp 18
Scaffold N50 7
Scaffold L50 (Mbp) 2.62
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.11, 3.34, 3.23


Gene Models FilteredModels2
length (bp) of: average median
gene 2288 1991
transcript 2116 1819
exon 684 439
intron 84 61
description:
protein length (aa) 505 420
exons per gene 3.09 3
# of gene models 11409


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.