Info • Bimuria novae-zelandiae CBS 107.79 v1.0

Status

[Jan 2015] The Bimuria novae-zelandiae genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Bimuria novae-zelandiae CBS 107.79 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 78.18
Sequencing read coverage depth 62.3x
# of contigs 1338
# of scaffolds 321
# of scaffolds >= 2Kbp 273
Scaffold N50 35
Scaffold L50 (Mbp) 0.71
# of gaps 1017
% of scaffold length in gaps 1.8%
Three largest Scaffolds (Mbp) 2.52, 2.38, 1.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 25015 24176 96.6%


Gene Models FilteredModels2
length (bp) of: average median
gene 1523 1284
transcript 1378 1140
exon 514 326
intron 89 57
description:
protein length (aa) 390 311
exons per gene 2.68 2
# of gene models 16681


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.