Info • Biscogniauxia sp. FL1348 v1.0

Status

[March 2019] The Biscogniauxia sp. genotype 304 FL1348 genome was sequenced with PacBio, assembled with Falcon v1.8.8, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Biscogniauxia sp. genotype 304 FL1348 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.73
Sequencing read coverage depth 317.58x
# of contigs 143
# of scaffolds 143
# of scaffolds >= 2Kbp 143
Scaffold N50 24
Scaffold L50 (Mbp) 0.55
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.89, 1.35, 1.31


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 62915 61420 97.6%
Ests est.fasta 218690904 217265233 99.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2055 1844
transcript 1849 1641
exon 618 386
intron 105 75
description:
protein length (aa) 479 401
exons per gene 2.99 3
# of gene models 10869


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.