Info • Biscogniauxia mediterranea AZ0048 v1.0

Status

[July 2019] The Biscogniauxia mediterranea AZ0048 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Biscogniauxia mediterranea v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.78
Sequencing read coverage depth 133.5x
# of contigs 634
# of scaffolds 620
# of scaffolds >= 2Kbp 589
Scaffold N50 94
Scaffold L50 (Mbp) 0.15
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.64, 0.51, 0.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 68003 64867 95.4%
Ests est.fasta 278914141 271622801 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2026 1819
transcript 1816 1621
exon 611 381
intron 108 75
description:
protein length (aa) 470 393
exons per gene 2.97 3
# of gene models 11079


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.