Info • Biscogniauxia mediterranea CBS 129072 v1.0

Status

[July 2019] The Biscogniauxia mediterranea CBS 129072 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Biscogniauxia mediterranea v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.04
Sequencing read coverage depth 122.89x
# of contigs 466
# of scaffolds 452
# of scaffolds >= 2Kbp 397
Scaffold N50 55
Scaffold L50 (Mbp) 0.27
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.25, 0.75, 0.62


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 63139 61796 97.9%
Ests est.fasta 180576018 179584418 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2027 1805
transcript 1817 1596
exon 607 378
intron 108 75
description:
protein length (aa) 473 396
exons per gene 2.99 3
# of gene models 11018


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.