Info • Biscogniauxia nummularia v1.0

Status

[October 2016] The Biscogniauxia nummularia BnCUCC2015 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Biscogniauxia nummularia v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.16
Sequencing read coverage depth 114.73x
# of contigs 57
# of scaffolds 57
# of scaffolds >= 2Kbp 57
Scaffold N50 11
Scaffold L50 (Mbp) 1.24
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.71, 2.56, 2.27


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47425 44583 94.0%
Ests est.fasta 147828922 145699815 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1738 1514
transcript 1553 1333
exon 532 320
intron 99 70
description:
protein length (aa) 452 375
exons per gene 2.92 2
# of gene models 11671


Collaborators

Dan Eastwood, Swansea University, UK

Joseph W. Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.