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Info • Bjerkandera adusta v1.0

Status

This draft release was produced using shredded consensus from Velvet-assembled Illumina data, Roche (454) standard and Roche (454) paired end. Gap closure with gapResolution closed 600 gaps (25%) in the initial assembly. Internal NCBI screening did not identify any contamination. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Bjerkandera adusta HHB-12826-SP SB-22 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 42.73
Sequencing read coverage depth 47.59
# of contigs 1263
# of scaffolds 508
# of scaffolds >= 2Kbp 508
Scaffold N50 13
Scaffold L50 (Mbp) 1.03
# of gaps 755
% of scaffold length in gaps 5.8%
Three largest Scaffolds (Mbp) 3.32, 2.08, 2.06


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 42673 35998 84.4%


Gene Models FilteredModels2
length (bp) of: average median
gene 1703 1424
transcript 1388 1168
exon 248 153
intron 71 55
description:
protein length (aa) 406 334
exons per gene 5.59 4
# of gene models 15473


Collaborators

 

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.