Info • Blastocladiella britannica v1.0

Status

[October 2016] The Blastocladiella britannica JEL711 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Blastocladiella britannica JEL711 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.08
Sequencing read coverage depth 139.1x
# of contigs 1574
# of scaffolds 1504
# of scaffolds >= 2Kbp 1238
Scaffold N50 254
Scaffold L50 (Mbp) 0.02
# of gaps 70
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 0.12, 0.12, 0.11


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43994 23495 53.4%
Ests est.fasta 114293027 102453920 89.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1691 1401
transcript 1542 1250
exon 515 299
intron 77 66
description:
protein length (aa) 466 369
exons per gene 2.99 3
# of gene models 9431


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA



Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.