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Info • Blakeslea trispora F921 v1.0

Status

[June 2018] The Blakeslea trispora F921 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Blakeslea trispora F921 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.52
Sequencing read coverage depth 142.4x
# of contigs 253
# of scaffolds 253
# of scaffolds >= 2Kbp 245
Scaffold N50 22
Scaffold L50 (Mbp) 0.46
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.73, 1.25, 1.11


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 323668352 156394418 48.3%
Ests Blatri1_ESTs 42663 39461 92.5%
Ests Blatri_F986_1_ESTs 68366 31806 46.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1599 1358
transcript 1374 1155
exon 339 198
intron 76 63
description:
protein length (aa) 402 325
exons per gene 4.06 3
# of gene models 11119


Collaborators

Luis Corrochano, University of Seville, Spain

Joey Spatafora, Oregon State, Oregon, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.