Status
This genome was sequenced by Pietro D. Spanu, James C. Abbott et al in Department of Life Sciences, Imperial College London, London, UK (Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism). Please check their data use policies.
Summary statistics for the Blumeria graminis f.sp.
hordei DH14 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 118.73 |
| Sequencing read coverage depth | 5x |
| # of contigs | 11503 |
| # of scaffolds | 6843 |
| # of scaffolds >= 2Kbp | 989 |
| Scaffold N50 | 18 |
| Scaffold L50 (Mbp) | 2.03 |
| # of gaps | 4660 |
| % of scaffold length in gaps | 25.9% |
| Three largest Scaffolds (Mbp) | 9.69, 6.65, 5.19 |
| Gene Models | BluGenModels | |
| length (bp) of: | average | median |
| gene | 1711 | 1413 |
| transcript | 1455 | 1176 |
| exon | 526 | 284 |
| intron | 70 | 55 |
| description: | ||
| protein length (aa) | 485 | 392 |
| exons per gene | 2.77 | 2 |
| # of gene models | 6470 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JK, Butcher SA, Gurr SJ, Lebrun MH, Ridout CJ, Schulze-Lefert P, Talbot NJ, Ahmadinejad N, Ametz C, Barton GR, Benjdia M, Bidzinski P, Bindschedler LV, Both M, Brewer MT, Cadle-Davidson L, Cadle-Davidson MM, Collemare J, Cramer R, Frenkel O, Godfrey D, Harriman J, Hoede C, King BC, Klages S, Kleemann J, Knoll D, Koti PS, Kreplak J, López-Ruiz FJ, Lu X, Maekawa T, Mahanil S, Micali C, Milgroom MG, Montana G, Noir S, O'Connell RJ, Oberhaensli S, Parlange F, Pedersen C, Quesneville H, Reinhardt R, Rott M, Sacristán S, Schmidt SM, Schön M, Skamnioti P, Sommer H, Stephens A, Takahara H, Thordal-Christensen H, Vigouroux M, Wessling R, Wicker T, Panstruga R
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism.
Science. 2010 Dec 10;330(6010):1543-6. doi: 10.1126/science.1194573
Spanu PD, Abbott JC, Amselem J, Burgis TA, Soanes DM, Stüber K, Ver Loren van Themaat E, Brown JK, Butcher SA, Gurr SJ, Lebrun MH, Ridout CJ, Schulze-Lefert P, Talbot NJ, Ahmadinejad N, Ametz C, Barton GR, Benjdia M, Bidzinski P, Bindschedler LV, Both M, Brewer MT, Cadle-Davidson L, Cadle-Davidson MM, Collemare J, Cramer R, Frenkel O, Godfrey D, Harriman J, Hoede C, King BC, Klages S, Kleemann J, Knoll D, Koti PS, Kreplak J, López-Ruiz FJ, Lu X, Maekawa T, Mahanil S, Micali C, Milgroom MG, Montana G, Noir S, O'Connell RJ, Oberhaensli S, Parlange F, Pedersen C, Quesneville H, Reinhardt R, Rott M, Sacristán S, Schmidt SM, Schön M, Skamnioti P, Sommer H, Stephens A, Takahara H, Thordal-Christensen H, Vigouroux M, Wessling R, Wicker T, Panstruga R
Genome expansion and gene loss in powdery mildew fungi reveal tradeoffs in extreme parasitism.
Science. 2010 Dec 10;330(6010):1543-6. doi: 10.1126/science.1194573
Funding
This project was not sequenced at the JGI.
