Info • Boeremia exigua MPI-SDFR-AT-0100 v1.0

Status

[January 2018] The Boeremia exigua MPI-SDFR-AT-0100 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Boeremia exigua v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.32
Sequencing read coverage depth 96.15x
# of contigs 26
# of scaffolds 26
# of scaffolds >= 2Kbp 25
Scaffold N50 6
Scaffold L50 (Mbp) 2.53
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.87, 3.48, 3.20


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 28739 28411 98.9%
Ests est.fasta 101152547 100343365 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1795 1582
transcript 1674 1473
exon 634 409
intron 75 54
description:
protein length (aa) 474 404
exons per gene 2.64 2
# of gene models 12871


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.