Info • Boletus edulis v1.0
Please note that this organism is for archival use only. Please see the current Boletus edulis BED1 v4.0 site for the latest data and information.

Status

Assembly v1 (November 2012) is a draft assembly of Solexa gDNA reads. A total of 1099 scaffolds and 46.6 Mbp were assembled using AllPathsLG.

Summary statistics for the Boletus edulis v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 46.64
Sequencing read coverage depth 135.0x
# of contigs 4723
# of scaffolds 1099
# of scaffolds >= 2Kbp 779
Scaffold N50 42
Scaffold L50 (Mbp) 0.29
# of gaps 3624
% of scaffold length in gaps 14.7%
Three largest Scaffolds (Mbp) 1.71, 1.45, 1.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 59693 48726 81.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1450 1103
transcript 1162 892
exon 238 150
intron 76 56
description:
protein length (aa) 340 247
exons per gene 4.88 4
# of gene models 16933


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.