Status
Assembly v1 (November 2012) is a draft assembly of Solexa gDNA reads. A total of 1099 scaffolds and 46.6 Mbp were assembled using AllPathsLG.
Summary statistics for the Boletus edulis v1.0 release are
below.
Genome Assembly | |
Genome Assembly size (Mbp} | 46.64 |
Sequencing read coverage depth | 135.0x |
# of contigs | 4723 |
# of scaffolds | 1099 |
# of scaffolds >= 2Kbp | 779 |
Scaffold N50 | 42 |
Scaffold L50 (Mbp) | 0.29 |
# of gaps | 3624 |
% of scaffold length in gaps | 14.7% |
Three largest Scaffolds (Mbp) | 1.71, 1.45, 1.38 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
Other | JGI_Rnnotator_RNA_contigs | 59693 | 48726 | 81.6% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1450 | 1103 |
transcript | 1162 | 892 |
exon | 238 | 150 |
intron | 76 | 56 |
description: | ||
protein length (aa) | 340 | 247 |
exons per gene | 4.88 | 4 |
# of gene models | 16933 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
- David Hibbett at Clark U.
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.