Info • Bolbitius vitellinus SZMC-NL-1974 v1.0


The Bolbitius vitellinus SZMC-NL-1974 genome was sequenced using PacBio technology, assembled together with Falcon, improved with finisherSC, polished with Quiver, and annotated with the JGI annotation pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.

The JGI annotation pipeline identified 4,999 gene models as possible diploid alleles, and excluded them from the filtered model/gene catalog set. These models are shown in the track "secondary_alleles", and are available from the download page.

Summary statistics for the Bolbitius vitellinus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.24
Sequencing read coverage depth 65x
# of contigs 428
# of scaffolds 428
# of scaffolds >= 2Kbp 425
Scaffold N50 20
Scaffold L50 (Mbp) 0.70
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.92, 2.61, 2.18

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 71786 68171 95.0%
Ests est.fasta 162287364 160332576 98.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1649 1405
transcript 1397 1197
exon 261 160
intron 60 53
protein length (aa) 409 339
exons per gene 5.35 4
# of gene models 14483


László Nagy, Biological Research Centre of the Hungarian Academy of Sciences

Joseph W. Spatafora, Oregon State University


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.