Info • Botryobasidium botryosum v1.0


This draft assembly was produced using shredded consensus from Velvet-assembled Illumina data, Roche (454) standard and Roche (454) paired end, assembled with Newbler. Gap closure with gapResolution closed 600 gaps (25%) in initial assembly. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Botryobasidium botryosum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 46.67
Sequencing read coverage depth 31.02
# of contigs 1446
# of scaffolds 334
# of scaffolds >= 2Kbp 334
Scaffold N50 28
Scaffold L50 (Mbp) 0.44
# of gaps 1112
% of scaffold length in gaps 2.0%
Three largest Scaffolds (Mbp) 2.16, 2.01, 1.78

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 45330 43008 94.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1684 1407
transcript 1343 1122
exon 241 149
intron 76 64
protein length (aa) 390 314
exons per gene 5.58 4
# of gene models 16526


Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.