Status
The genome of Botryosphaeria dothidea was not sequenced by the JGI but by the Oregon State University. For more information, contact Prof. Dr. Joey Spatafora. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Botryosphaeria dothidea v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 43.50 |
| Sequencing read coverage depth | |
| # of contigs | 3301 |
| # of scaffolds | 1711 |
| # of scaffolds >= 2Kbp | 1028 |
| Scaffold N50 | 146 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 1590 |
| % of scaffold length in gaps | 0.7% |
| Three largest Scaffolds (Mbp) | 0.47, 0.41, 0.39 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1803 | 1449 |
| transcript | 1578 | 1269 |
| exon | 472 | 278 |
| intron | 97 | 61 |
| description: | ||
| protein length (aa) | 526 | 423 |
| exons per gene | 3.34 | 3 |
| # of gene models | 14998 |
Collaborators
- Joey Spatafora, Oregon State University
- Pedro Crous, CBS Fungal Biodiversity Centre, Utrecht, The Netherlands
- Bernard Slippers, Forestry and Agricultural Biotechnology Institute (FABI), University of Pretoria, Republic of South Africa
Funding
This project was not sequenced at the JGI.
