Status
The genome of Botryosphaeria dothidea was not sequenced by the JGI but by the Oregon State University. For more information, contact Prof. Dr. Joseph Spatafora. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Botryosphaeria dothidea v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 43.50 |
| Sequencing read coverage depth | |
| # of contigs | 3301 |
| # of scaffolds | 1711 |
| # of scaffolds >= 2Kbp | 1028 |
| Scaffold N50 | 146 |
| Scaffold L50 (Mbp) | 0.09 |
| # of gaps | 1590 |
| % of scaffold length in gaps | 0.7% |
| Three largest Scaffolds (Mbp) | 0.47, 0.41, 0.39 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1803 | 1449 |
| transcript | 1581 | 1272 |
| exon | 473 | 279 |
| intron | 97 | 61 |
| description: | ||
| protein length (aa) | 527 | 424 |
| exons per gene | 3.34 | 3 |
| # of gene models | 14998 |
Collaborators
Joseph
Spatafora, Oregon State University
Pedro
Crous, CBS Fungal Biodiversity Centre, Utrecht, The
Netherlands
Bernard
Slippers, Forestry and Agricultural Biotechnology Institute
(FABI), University of Pretoria, Republic of South Africa
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Marsberg A, Kemler M, Jami F, Nagel JH, Postma-Smidt A, Naidoo S, Wingfield MJ, Crous PW, Spatafora JW, Hesse CN, Robbertse B, Slippers B
Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health.
Mol Plant Pathol. 2017 May;18(4):477-488. doi: 10.1111/mpp.12495
Marsberg A, Kemler M, Jami F, Nagel JH, Postma-Smidt A, Naidoo S, Wingfield MJ, Crous PW, Spatafora JW, Hesse CN, Robbertse B, Slippers B
Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health.
Mol Plant Pathol. 2017 May;18(4):477-488. doi: 10.1111/mpp.12495
Funding
This project was not sequenced at the JGI.
