Status
The Paecilomyces niveus genome was sequenced using MySeq paired-end 2x250bp from TruSeq PCR free libraries at Cornell's Sequencing Facility. The assembly was done using IDBA_UD by the Hodge lab at Cornell University and annotated using the JGI annotation pipeline.
Summary statistics for the Byssochlamys nivea v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.02 |
| Sequencing read coverage depth | 104x |
| # of contigs | 586 |
| # of scaffolds | 586 |
| # of scaffolds >= 2Kbp | 471 |
| Scaffold N50 | 60 |
| Scaffold L50 (Mbp) | 0.19 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.71, 0.57, 0.51 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1714 | 1437 |
| transcript | 1480 | 1233 |
| exon | 415 | 224 |
| intron | 93 | 64 |
| description: | ||
| protein length (aa) | 493 | 411 |
| exons per gene | 3.57 | 3 |
| # of gene models | 10584 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Biango-Daniels MN, Wang TW, Hodge KT
Draft Genome Sequence of the Patulin-Producing Fungus Paecilomyces niveus Strain CO7.
Genome Announc. 2018 Jun 21;6(25):. doi: 10.1128/genomeA.00556-18
Biango-Daniels MN, Wang TW, Hodge KT
Draft Genome Sequence of the Patulin-Producing Fungus Paecilomyces niveus Strain CO7.
Genome Announc. 2018 Jun 21;6(25):. doi: 10.1128/genomeA.00556-18
Funding
This project was not sequenced at the JGI.
