Info • Cadophora malorum M34


The Cadophora malorum M34 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on June 8, 2022. The JGI Annotation Pipeline was used to add functional annotation to this genome. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 363 models from Cadophora malorum M34 and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Genome Assembly
Genome Assembly size (Mbp) 48.85
Sequencing read coverage depth 203x
# of contigs 760
# of scaffolds 760
# of scaffolds >= 2Kbp 721
Scaffold N50 127
Scaffold L50 (Mbp) 0.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.93, 0.48, 0.47

Gene Models FilteredModels1
length (bp) of: average median
gene 1598 1356
transcript 1412 1179
exon 438 253
intron 86 57
protein length (aa) 471 393
exons per gene 3.22 3
# of gene models 16037

Genome Reference(s)



This project was not sequenced at the JGI.