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Info • Cadophora sp. DSE1049 v1.0

Status

The genome of Cadophora sp. DSE1049 was sequenced using Illumina technology and assembled using AllPathsLG version R47710.

Summary statistics for the Cadophora sp. DSE1049 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 70.46
Sequencing read coverage depth 79.2x
# of contigs 1294
# of scaffolds 1193
# of scaffolds >= 2Kbp 1092
Scaffold N50 71
Scaffold L50 (Mbp) 0.24
# of gaps 101
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.38, 1.24, 1.23


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Assembled_RNAseq_reads 39120 38428 98.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1583 1358
transcript 1401 1200
exon 460 292
intron 91 58
description:
protein length (aa) 409 338
exons per gene 3.04 3
# of gene models 22766


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.