We will have a brief downtime on Tuesday May 28 between 8:45 and 9:30 am PDT due to network equipment maintenance.
Info • Cafeteria roenbergensis BVI

Status

The Cafeteria roenbergensis genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on March 24, 2022. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 36.28
Sequencing read coverage depth
# of contigs 169
# of scaffolds 169
# of scaffolds >= 2Kbp 169
Scaffold N50 25
Scaffold L50 (Mbp) 0.46
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.53, 1.35, 1.17


Gene Models NCBI_nuclear_models
length (bp) of: average median
gene 2609 1811
transcript 2073 1392
exon 719 230
intron 287 208
description:
protein length (aa) 691 464
exons per gene 2.88 2
# of gene models 8555


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.