Status
[February 2021] The genome of Candida membranifaciens IST 626 was sequenced by Novogene Bioinformatics Technology Co. Ltd. (Hong Kong) and assembled by Margarida Palma at Instituto Superior Técnico, University of Lisbon, Portugal. The JGI Fungal Annotation pipeline was used to predict genes and provide functional annotation. The mitochondrial genome is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 11.48 |
| Sequencing read coverage depth | |
| # of contigs | 79 |
| # of scaffolds | 55 |
| # of scaffolds >= 2Kbp | 55 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 0.67 |
| # of gaps | 24 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.05, 0.98, 0.86 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1494 | 1269 |
| transcript | 1467 | 1251 |
| exon | 1212 | 1044 |
| intron | 132 | 92 |
| description: | ||
| protein length (aa) | 489 | 417 |
| exons per gene | 1.21 | 1 |
| # of gene models | 5619 |
Collaborators
- Margarida Palma, Instituto Superior Técnico, Lisbon, Portugal
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Palma M, Mondo S, Pereira M, Vieira É, Grigoriev IV, Sá-Correia I
Genome Sequence and Analysis of the Flavinogenic Yeast Candida membranifaciens IST 626.
J Fungi (Basel). 2022 Mar 1;8(3):. doi: 10.3390/jof8030254
Palma M, Mondo S, Pereira M, Vieira É, Grigoriev IV, Sá-Correia I
Genome Sequence and Analysis of the Flavinogenic Yeast Candida membranifaciens IST 626.
J Fungi (Basel). 2022 Mar 1;8(3):. doi: 10.3390/jof8030254
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetales Debaryomycetaceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
