Info • Candida tenuis NRRL Y-1498 v1.0


Assembly v1 (27 Apr 2009) is a 'hybrid' assembly of 454 and Sanger gDNA reads. 25 scaffolds and 10.7 Mbp were assembled using Newbler v2:

Nuclear Genome Assembly v1.0
Scaffold count: 25
All Contig count: 668
Large (>500bp) Contig count: 139
Scaffold sequence bases total: 10.7 Mb
Scaffolded (Large) Contig sequence bases total: 10.6 Mb
Estimated % sequence bases in gaps: 0.9%
Scaffold N50: 1.2 Mb
Contig N50: 0.4 Mb
Number of scaffolds > 50.0 Kb: 8
% in scaffolds > 50.0 Kb: 99.3%
Percent GC: 42%

Annotation v1.1 (22 Dec 2009) of the v1.0 assembly was produced by the JGI Annotation Pipeline, using a variety of cDNA-based, protein-based, and ab initio gene predictors. After filtering for EST and protein homology support, a total of 5533 genes were structurally and functionally annotated.

Nuclear Genome Annotation v1.1
# gene models: 5533
Gene density: 515 genes per Mbp scaffold
Ave. gene length: 1614 nt
Ave. protein length: 447 aa
Ave. exon frequency : 1.2 exons per gene
% genes with intron: 18 %
% complete models (with start and stop codons): 97 %
% genes with EST support 99 %
% genes with homology support 95 %
% genes with Pfam domains: 71 %
% genes with transmembrane domain: 19 %

Genome Reference(s)


This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.