Status
v.1.0 (August 23, 2007): The assembly release version 1.0 of whole genome shotgun reads was constructed with the JGI assembler, Jazz, using paired end sequencing reads at a coverage of ~7.9X. After trimming for vector and quality, 2,335,056 reads assembled into 21,042 main genome scaffolds totaling 333.7 Mb. Roughly half of the genome is contained in 454 scaffolds all at least 188 Kb in length.
The current draft release, version 1.0, includes a total of 32,415 gene models predicted and functionally annotated using the JGI annotation pipeline.
Collaborators
- Rob Savage, Williams College
- Elaine Seaver, University of Hawaii
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, Shapiro H, Aerts A, Otillar RP, Terry AY, Boore JL, Grigoriev IV, Lindberg DR, Seaver EC, Weisblat DA, Putnam NH, Rokhsar DS
Insights into bilaterian evolution from three spiralian genomes.
Nature. 2013 Jan 24;493(7433):526-31. doi: 10.1038/nature11696
Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, Shapiro H, Aerts A, Otillar RP, Terry AY, Boore JL, Grigoriev IV, Lindberg DR, Seaver EC, Weisblat DA, Putnam NH, Rokhsar DS
Insights into bilaterian evolution from three spiralian genomes.
Nature. 2013 Jan 24;493(7433):526-31. doi: 10.1038/nature11696
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
