Info • Capronia fungicola CBS 614.96 v1.0


[June 2019] The Capronia fungicola CBS 614.96 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Capronia fungicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 25.19
Sequencing read coverage depth 173.38x
# of contigs 7
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 2
Scaffold L50 (Mbp) 7.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 7.65, 7.32, 5.40

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46682 39562 84.7%
Ests est.fasta 233857410 51386132 22.0%
The RNA libraries were heavily contaminated leading to poor mapping of reads (ESTs). Only genome-mapping reads were used for transcriptome assembly (EstClusters).

Gene Models FilteredModels1
length (bp) of: average median
gene 1879 1637
transcript 1723 1509
exon 695 403
intron 107 64
protein length (aa) 490 414
exons per gene 2.48 2
# of gene models 9241


Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.