Info • Cassiopea xamachana


The genome sequence and gene prediction of Cassiopea xamachana have not been determined by the Joint Genome Institute (JGI), but were provided by Aki Ohdera on June 10, 2019. In order to allow comparative analyses with other genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by Aki Ohdera and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Cassiopea xamachana v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 366.84
Sequencing read coverage depth 1x
# of contigs 41198
# of scaffolds 735
# of scaffolds >= 2Kbp 340
Scaffold N50 8
Scaffold L50 (Mbp) 17.88
# of gaps 40463
% of scaffold length in gaps 1.5%
Three largest Scaffolds (Mbp) 25.64, 25.56, 25.47

Gene Models ExternalModels
length (bp) of: average median
gene 8811 3410
transcript 1708 1071
exon 285 125
intron 1425 747
protein length (aa) 411 286
exons per gene 5.99 3
# of gene models 29645


Monica Medina, Pennsylvania State University, PA, USA


This project was not sequenced at the JGI.