Status
The genome sequence and gene prediction of Cassiopea xamachana have not been determined by the Joint Genome Institute (JGI), but were provided by Aki Ohdera on June 10, 2019. In order to allow comparative analyses with other genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by Aki Ohdera and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Cassiopea xamachana v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 366.84 |
| Sequencing read coverage depth | 1x |
| # of contigs | 41198 |
| # of scaffolds | 735 |
| # of scaffolds >= 2Kbp | 340 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 17.88 |
| # of gaps | 40463 |
| % of scaffold length in gaps | 1.5% |
| Three largest Scaffolds (Mbp) | 25.64, 25.56, 25.47 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 8811 | 3410 |
| transcript | 1708 | 1071 |
| exon | 285 | 125 |
| intron | 1425 | 747 |
| description: | ||
| protein length (aa) | 411 | 286 |
| exons per gene | 5.99 | 3 |
| # of gene models | 29645 |
Collaborators
Monica Medina, Pennsylvania State University, PA, USA
Funding
This project was not sequenced at the JGI.
