Status
The Catenaria anguillulae PL171 genome was sequenced using the Illumina platform and assembled using AllPathsLG.
Summary statistics for the Catenaria anguillulae PL171
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.22 |
| Sequencing read coverage depth | 93.4x |
| # of contigs | 2577 |
| # of scaffolds | 801 |
| # of scaffolds >= 2Kbp | 626 |
| Scaffold N50 | 68 |
| Scaffold L50 (Mbp) | 0.16 |
| # of gaps | 1776 |
| % of scaffold length in gaps | 8.9% |
| Three largest Scaffolds (Mbp) | 0.81, 0.56, 0.47 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | RNAseq_assemblies | 41482 | 36385 | 87.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1568 | 1245 |
| transcript | 1397 | 1108 |
| exon | 559 | 354 |
| intron | 116 | 81 |
| description: | ||
| protein length (aa) | 412 | 315 |
| exons per gene | 2.50 | 2 |
| # of gene models | 14188 |
Collaborators
Joseph Spatafora Ph.D., Dept. of Botany & Plant Pathology, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
