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Info • Catenaria anguillulae PL171 v2.0

Status

[July 2016] The Catenaria anguillulae PL171 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline.

This genome was identified to be at least a diploid. Therefore, we have added info on primary and secondary alleles to downloads and the genome browser, as well as created blast databases for querying allelic variants

Summary statistics for the Catenaria anguillulae PL171 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.34
Sequencing read coverage depth 1.0x
# of contigs 509
# of scaffolds 509
# of scaffolds >= 2Kbp 503
Scaffold N50 41
Scaffold L50 (Mbp) 0.22
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.36, 1.22, 1.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 232664136 226324392 97.3%
Ests RNNotator_assembled_Illumina_ESTs 41482 37727 90.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1521 1237
transcript 1360 1093
exon 487 311
intron 92 79
description:
protein length (aa) 390 296
exons per gene 2.79 2
# of gene models 12804


Collaborators

Joseph Spatafora Ph.D., Dept. of Botany & Plant Pathology, Oregon State University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.